MBI has demonstrated at laboratory scale a mechanically-simple AFEX process that exploits the high porosities of biomass packed beds to facilitate ammonia transport and recovery, while providing pretreatment efficacy equal to benchmark stirred batch treatment. Results from the laboratory scale reactors show ammonia recovery of >96%, with 70-80% yield of available sugars from treated biomass. A preliminary technoeconomic analysis of a depot treating 100 tons of corn stover per day shows that the packed bed design offers greater than 50% capital cost reduction compared to conventional AFEX process designs. MBI is testing the scalability of packed bed AFEX with a pilot-scale reactor system, scheduled to be online February 2013, with a bed size approximately 50 times larger than laboratory scale, and 50 times smaller than depot scale. Details of the pilot plant process design, construction, and operation will be presented, and results of corn stover pretreatment in the laboratory and pilot scale packed bed reactors will be compared.