P7 Comparative features of sixteen yeast genomes having significant biotechnological interest
Sunday, August 2, 2015
Prof. Thomas W. Jeffries1, Dr. Sajeet Haridas2, Dr. Robert Riley2, Dr. Asaf Salamov2, Dr. Markus Göker3, Chris T. Hittinger4, Prof. Hans-Peter Klenk5, C.P. Kurtzman6, Prof. Meredith Blackwell7, Prof. Ken Wolfe8, Dr. Igor Grigoriev2 and Prof. Antonis Rokas9, (1)Xylome Corporation, Madison, WI, (2)Joint Genome Institute, Department of Energy, Walnut Creek, CA, (3)DSMZ-German Collection of Microorganisms and Cell Cultures, Leigniz Institute, Braunschweig, Germany, (4)Department of Genetics, University of Wisconsin-Madison, Madison, WI, (5)School of Biology, Newcastle University, Newcastle upon Tyne, England, (6)National Center for Agricultural Utilization Research, USDA-ARS, Peoria, IL, (7)Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, (8)UCD Conway Institute, University College Dublin, Dublin, Ireland, (9)Biological Sciences, Vanderbilt University, Nashville, TN

Saccharomyces cerevisiae has been used in fermentations for millennia and metabolically engineered for decades. While its genetic system is powerful, its limited capacities for ATP and NADPH production along with the limited range of substrates that it will use for growth make it less useful for various biotechnological applications. Komagataella (Pichia) pastoris along with Ogataea (Hansenula) polymorpha are better for heterologous expression due to their high protein yields and thermotolerance while growing on methanol. Yarrowia lipolytica and Lipomyces starkeyi accumulate large amounts of lipid production from a wide range of substrates. Scheffersomyces stipitis, Spathaspora passalidarum and Pachysolen tannophilus natively ferment cellulosic and hemicellulosic sugars, and Candida arabinofermentans has a rare native ability to ferment L-arabinose. Pichia membranifaciens is halotolerant, and ethanol tolerant and produces acetaldehyde, ethyl acetate, and iso-amyl acetate. Dekkera bruxellensis is a facultative anaerobe tolerant to low pH and high ethanol levels. Wickerhamomyces anomalus grows on a wide range of carbon sources at low pH under high osmotic pressure and with little or no oxygen.  Debaryomyces hansenii is a cryotolerant, osmotolerant and halotolerant marine yeast that can grow in up to 24% brine, due to its high capacity for glycerol production. Cyberlindnera jadinii (Candida utilis) is used as a fodder yeast and as a dietary supplement. It grows aerobically on pentoses and tolerates lignin by-products, which has made it attractive for fermentation of spent sulfite liquor. The genomic features defining these biotechnologically useful traits will be described and compared where they can be discerned.